Variant report

Variant	rs2365682
Chromosome Location	chr14:78779686-78779687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1569325	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1882816	0.83[CHB][hapmap];0.89[CHD][hapmap]
rs7158430	0.83[CHB][hapmap]
rs9805887	0.83[CHB][hapmap]
rs986980	0.85[GIH][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1054051	chr14:78772614-78805311	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2365682	TMED10	cis	cerebellum	SCAN
rs2365682	TSHR	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78769200-78783200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:78774600-78782600	Weak transcription	Fetal Brain Male	brain
3	chr14:78777800-78779800	Enhancers	Brain Hippocampus Middle	brain
4	chr14:78778200-78779800	Enhancers	Fetal Lung	lung
5	chr14:78778200-78781000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr14:78778200-78781200	Enhancers	Brain Substantia Nigra	brain
7	chr14:78778600-78780400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:78778800-78780600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:78778800-78781600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:78778800-78781600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:78779000-78779800	Enhancers	Brain Angular Gyrus	brain
12	chr14:78779200-78787000	Enhancers	Brain Germinal Matrix	brain
13	chr14:78779400-78779800	Enhancers	Adipose Nuclei	Adipose
14	chr14:78779400-78786000	Weak transcription	Brain Anterior Caudate	brain
15	chr14:78779600-78779800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:78779600-78779800	Enhancers	K562	blood
17	chr14:78779600-78781600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:78779600-78782200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:78779600-78782800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:78779600-78783000	Weak transcription	Primary monocytes fromperipheralblood	blood

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