Variant report

Variant	rs9805887
Chromosome Location	chr14:78783332-78783333
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1004667	0.81[CHB][hapmap]
rs10147289	0.82[CHB][hapmap]
rs10147843	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs11159352	0.83[EUR][1000 genomes]
rs12880553	0.83[EUR][1000 genomes]
rs1882816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2365682	0.83[CHB][hapmap]
rs4903735	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7148087	0.83[EUR][1000 genomes]
rs7158430	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1054051	chr14:78772614-78805311	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78779200-78787000	Enhancers	Brain Germinal Matrix	brain
2	chr14:78779400-78786000	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78780400-78783400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:78780600-78783800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:78780800-78783600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:78780800-78783800	Enhancers	K562	blood
7	chr14:78781000-78783600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:78781800-78783800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:78782400-78783600	Enhancers	Brain Hippocampus Middle	brain
10	chr14:78782600-78783600	Enhancers	Fetal Brain Male	brain
11	chr14:78782600-78783800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:78782800-78783400	Enhancers	Brain Cingulate Gyrus	brain
13	chr14:78783000-78783400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr14:78783000-78783400	Enhancers	Brain Substantia Nigra	brain
15	chr14:78783000-78783600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr14:78783200-78783600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:78783200-78785200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:78783200-78794000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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