Variant report

Variant	rs10147289
Chromosome Location	chr14:78748366-78748367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1004667	0.83[CHB][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs10147843	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1523131	0.80[EUR][1000 genomes]
rs1882809	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1882811	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1882816	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4903733	0.80[EUR][1000 genomes]
rs4903735	0.91[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4903739	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7158430	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs909199	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs926099	0.95[CEU][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes]
rs9805887	0.82[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10147289	TSHR	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78731000-78764200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:78738600-78778200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78738600-78779000	Weak transcription	Brain Angular Gyrus	brain
4	chr14:78745000-78757800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:78745200-78751800	Weak transcription	Brain Germinal Matrix	brain
6	chr14:78748200-78748400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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