Variant report

Variant	rs1004667
Chromosome Location	chr14:78734765-78734766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10147289	0.83[CHB][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs10147843	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1569325	0.85[CHB][hapmap]
rs1882816	0.82[CHB][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap]
rs4903735	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs4903739	0.81[EUR][1000 genomes]
rs7158430	0.81[CHB][hapmap]
rs909199	0.94[ASN][1000 genomes]
rs926099	0.82[EUR][1000 genomes]
rs9805887	0.81[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1004667	CNNM1	trans	parietal	SCAN
rs1004667	TSHR	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78731000-78736600	Weak transcription	Brain Anterior Caudate	brain
2	chr14:78731000-78736600	Weak transcription	Brain Substantia Nigra	brain
3	chr14:78731000-78764200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:78731400-78736800	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:78731400-78748200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:78731600-78737800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:78731800-78736400	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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