Variant report

Variant	rs2366207
Chromosome Location	chr1:62753802-62753803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10157938	0.81[ASN][1000 genomes]
rs10465842	0.98[ASN][1000 genomes]
rs10889318	0.87[ASN][1000 genomes]
rs11207956	0.81[EUR][1000 genomes]
rs12123763	0.81[EUR][1000 genomes]
rs12749514	0.98[ASN][1000 genomes]
rs1325740	0.87[ASN][1000 genomes]
rs1886833	0.89[ASN][1000 genomes]
rs1886834	0.87[ASN][1000 genomes]
rs1925827	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2477874	0.98[ASN][1000 genomes]
rs2666509	0.95[ASN][1000 genomes]
rs2765266	0.98[ASN][1000 genomes]
rs2765268	0.98[ASN][1000 genomes]
rs2765269	0.98[ASN][1000 genomes]
rs35126231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850632	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4915606	0.98[ASN][1000 genomes]
rs4915607	0.98[ASN][1000 genomes]
rs6587966	0.85[ASN][1000 genomes]
rs6658312	0.98[ASN][1000 genomes]
rs6675508	0.87[ASN][1000 genomes]
rs6675627	0.87[ASN][1000 genomes]
rs7514266	0.98[ASN][1000 genomes]
rs881548	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004446	chr1:62394631-62813533	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv534984	chr1:62394631-62813533	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1009398	chr1:62656660-62780644	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62751600-62754200	Enhancers	Placenta	Placenta
2	chr1:62751600-62754800	Enhancers	Fetal Heart	heart
3	chr1:62751600-62755000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:62751600-62756200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:62751800-62754800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:62752400-62754400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:62752600-62754600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:62752600-62755600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:62753000-62754000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:62753000-62754800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:62753000-62756400	Enhancers	HepG2	liver
12	chr1:62753200-62754400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr1:62753200-62760000	Weak transcription	Fetal Stomach	stomach
14	chr1:62753200-62761600	Weak transcription	Pancreas	Pancrea
15	chr1:62753200-62761600	Weak transcription	Right Atrium	heart
16	chr1:62753400-62754200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr1:62753400-62755000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:62753400-62755200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:62753600-62755200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:62753800-62754200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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