Variant report

Variant	rs881548
Chromosome Location	chr1:62772782-62772783
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10157938	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465842	0.83[ASN][1000 genomes]
rs10493318	0.90[JPT][hapmap]
rs10889318	0.90[CHB][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs11207955	0.90[JPT][hapmap]
rs11207956	0.90[JPT][hapmap]
rs12031176	1.00[JPT][hapmap]
rs12038843	0.90[JPT][hapmap]
rs12127630	0.81[JPT][hapmap]
rs12138544	0.90[JPT][hapmap]
rs12749514	0.83[ASN][1000 genomes]
rs1325740	0.94[ASN][1000 genomes]
rs1886833	0.92[ASN][1000 genomes]
rs1886834	0.90[CHB][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs1925827	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2366207	0.81[ASN][1000 genomes]
rs2477874	0.83[ASN][1000 genomes]
rs2666509	0.80[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2765266	0.80[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2765268	0.80[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2765269	0.80[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs35126231	0.81[ASN][1000 genomes]
rs3850629	1.00[JPT][hapmap]
rs3861936	0.88[JPT][hapmap]
rs4915606	0.80[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs4915607	0.80[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs6587966	0.96[ASN][1000 genomes]
rs6658312	0.83[ASN][1000 genomes]
rs6675508	0.90[CHB][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs6675627	0.94[ASN][1000 genomes]
rs7514266	0.83[ASN][1000 genomes]
rs7528920	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9803815	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004446	chr1:62394631-62813533	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv534984	chr1:62394631-62813533	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1009398	chr1:62656660-62780644	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
5	nsv871893	chr1:62767953-62819067	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv871250	chr1:62769887-62799451	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62754400-62773400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:62762200-62773200	Weak transcription	Fetal Lung	lung
3	chr1:62767600-62780600	Weak transcription	HepG2	liver
4	chr1:62768000-62773600	Weak transcription	Fetal Stomach	stomach
5	chr1:62768000-62776800	Weak transcription	Fetal Kidney	kidney
6	chr1:62769000-62772800	Weak transcription	Adipose Nuclei	Adipose
7	chr1:62770800-62773200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:62770800-62773200	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:62770800-62775600	Weak transcription	Gastric	stomach
10	chr1:62771000-62773200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:62772400-62776000	Enhancers	Pancreas	Pancrea
12	chr1:62772600-62774400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:62772600-62776400	Enhancers	HMEC	breast
14	chr1:62772600-62776600	Enhancers	Placenta	Placenta

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