Variant report

Variant	rs2366297
Chromosome Location	chr2:32112466-32112467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:32107476..32109627-chr2:32111254..32113960,2	MCF-7	breast:
2	chr2:32104256..32106356-chr2:32111358..32113038,2	K562	blood:
3	chr2:32112402..32115115-chr2:32387877..32390821,4	K562	blood:
4	chr2:32107738..32109583-chr2:32112343..32114053,2	K562	blood:
5	chr2:32111335..32113138-chr2:32233431..32236422,2	K562	blood:

Variant related genes	Relation type
ENSG00000162959	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10439444	0.82[CHB][hapmap];0.89[YRI][hapmap]
rs10490360	0.82[CHB][hapmap]
rs11124274	0.82[CHB][hapmap]
rs11124275	0.82[CHB][hapmap]
rs12475443	0.82[EUR][1000 genomes]
rs1272585	0.80[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12989936	0.82[CHB][hapmap]
rs13017189	0.82[CHB][hapmap]
rs160797	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs160801	0.87[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs160803	0.81[EUR][1000 genomes]
rs17767988	0.82[CHB][hapmap]
rs1904489	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs223621	0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs223665	0.88[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2280967	0.82[CHB][hapmap]
rs2365555	0.82[CHB][hapmap]
rs41280625	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs467523	0.82[CHB][hapmap]
rs6737500	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs6752375	0.83[JPT][hapmap]
rs6758024	0.86[CHB][hapmap]
rs6760105	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs7577696	0.82[CHB][hapmap]
rs7586448	0.82[CHB][hapmap]
rs7601267	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	esv1801791	chr2:32077901-32120807	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32057200-32117200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:32061600-32172800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:32064600-32142400	Weak transcription	NHDF-Ad	bronchial
4	chr2:32065400-32123000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:32068000-32121400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:32068400-32115400	Weak transcription	NHEK	skin
7	chr2:32068400-32121400	Weak transcription	Fetal Brain Female	brain
8	chr2:32069000-32116600	Weak transcription	Osteobl	bone
9	chr2:32071000-32115400	Weak transcription	Placenta	Placenta
10	chr2:32071800-32116000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr2:32074600-32127000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:32075800-32170000	Weak transcription	Aorta	Aorta
13	chr2:32077200-32115000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:32077200-32116400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr2:32083000-32115200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:32086200-32127000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr2:32086600-32174400	Weak transcription	NHLF	lung
18	chr2:32087600-32115200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:32088000-32116000	Weak transcription	Adipose Nuclei	Adipose
20	chr2:32088000-32157600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:32088200-32127600	Weak transcription	K562	blood
22	chr2:32089400-32160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr2:32090000-32116600	Weak transcription	NH-A	brain
24	chr2:32090200-32116000	Weak transcription	Dnd41	blood
25	chr2:32090800-32116000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:32092400-32116400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr2:32093000-32122200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:32099600-32193000	Weak transcription	Hela-S3	cervix
29	chr2:32100800-32147800	Weak transcription	Spleen	Spleen
30	chr2:32101200-32123600	Weak transcription	HUVEC	blood vessel
31	chr2:32101600-32127000	Weak transcription	Brain Hippocampus Middle	brain
32	chr2:32102600-32115600	Weak transcription	HSMMtube	muscle
33	chr2:32103200-32133600	Weak transcription	Brain Germinal Matrix	brain
34	chr2:32103400-32112600	Weak transcription	GM12878-XiMat	blood
35	chr2:32103600-32115800	Weak transcription	Psoas Muscle	Psoas
36	chr2:32103600-32125800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr2:32103800-32115800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr2:32104200-32115600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:32104600-32113200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr2:32104600-32123600	Weak transcription	Fetal Kidney	kidney
41	chr2:32104600-32131600	Weak transcription	Fetal Heart	heart
42	chr2:32105000-32127000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr2:32105200-32115800	Weak transcription	HMEC	breast
44	chr2:32105400-32146600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr2:32107000-32115800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr2:32107000-32115800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr2:32107200-32112800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr2:32107200-32113000	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr2:32107200-32115200	Weak transcription	Fetal Thymus	thymus
50	chr2:32107200-32115600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links