Variant report
Variant | rs223665 |
---|---|
Chromosome Location | chr2:32019747-32019748 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000223647 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10439444 | 0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap] |
rs1090825 | 0.91[EUR][1000 genomes] |
rs1090828 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12475443 | 0.81[EUR][1000 genomes] |
rs1272585 | 0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes] |
rs160797 | 0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap] |
rs160801 | 0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes] |
rs160803 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs160804 | 0.81[ASN][1000 genomes] |
rs160805 | 0.81[ASN][1000 genomes] |
rs223621 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs223649 | 0.91[ASN][1000 genomes] |
rs2366297 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap] |
rs28797569 | 0.89[ASN][1000 genomes] |
rs481126 | 0.85[EUR][1000 genomes] |
rs564310 | 0.88[EUR][1000 genomes] |
rs806584 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532648 | chr2:31591498-32312698 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
2 | esv3376782 | chr2:31861607-32046180 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1003376 | chr2:31889934-32022595 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1015021 | chr2:31972738-32030696 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv873777 | chr2:32019747-32197123 | Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |