Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1090825	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1090828	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12470143	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs1272585	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs160801	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs160803	0.84[EUR][1000 genomes]
rs223621	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes]
rs223649	0.85[ASN][1000 genomes]
rs223665	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2268796	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2268797	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2300700	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs2300702	0.87[JPT][hapmap]
rs2300703	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs481126	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4952220	0.81[JPT][hapmap]
rs564310	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59255043	0.82[ASN][1000 genomes]
rs635304	0.82[ASN][1000 genomes]
rs665237	0.82[ASN][1000 genomes]
rs693918	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003376	chr2:31889934-32022595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv961025	chr2:31910984-31922498	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31908400-31924200	ZNF genes & repeats	Liver	Liver

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