Variant report

Variant	rs2367237
Chromosome Location	chr2:86639427-86639428
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10178917	0.85[AMR][1000 genomes]
rs10180036	0.81[AMR][1000 genomes]
rs10208989	0.82[AMR][1000 genomes]
rs12617075	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12714184	0.81[AMR][1000 genomes]
rs12714186	0.81[AMR][1000 genomes]
rs13035266	0.89[AMR][1000 genomes]
rs13383096	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13420491	0.81[AMR][1000 genomes]
rs4832282	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs908791	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs958561	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2367237	VPS24	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86638600-86640600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:86639000-86640600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:86639200-86640200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:86639200-86640400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr2:86639200-86640400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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