Variant report

Variant	rs2367281
Chromosome Location	chr5:90403175-90403176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90403057..90405886-chr5:90674744..90678656,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2438346	1.00[EUR][1000 genomes]
rs4916693	1.00[EUR][1000 genomes]
rs6878024	1.00[EUR][1000 genomes]
rs73773313	1.00[AMR][1000 genomes]
rs7738012	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90395400-90406000	Weak transcription	Fetal Heart	heart
2	chr5:90395400-90415200	Weak transcription	Left Ventricle	heart
3	chr5:90396200-90422800	Weak transcription	Esophagus	oesophagus
4	chr5:90398200-90405200	Weak transcription	Brain Anterior Caudate	brain
5	chr5:90398200-90406200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:90398200-90406400	Weak transcription	Brain Angular Gyrus	brain
7	chr5:90399400-90406200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:90401400-90406200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:90401600-90405000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:90401600-90431800	Weak transcription	K562	blood
11	chr5:90402200-90407200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:90402400-90403400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:90402400-90403400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:90402400-90403400	Flanking Active TSS	NHDF-Ad	bronchial
15	chr5:90402400-90413600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:90402600-90403400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:90402600-90403400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:90402600-90403400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:90402800-90403200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:90402800-90403200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:90402800-90403400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:90402800-90403400	Enhancers	Fetal Muscle Leg	muscle
23	chr5:90403000-90403200	Enhancers	Psoas Muscle	Psoas
24	chr5:90403000-90405400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:90403000-90405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:90403000-90415600	Weak transcription	Right Atrium	heart
27	chr5:90403000-90431600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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