Variant report

Variant	rs73773313
Chromosome Location	chr5:90478919-90478920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90474806..90477706-chr5:90478635..90481479,3	K562	blood:
2	chr5:90477596..90479600-chr5:90677496..90679146,2	K562	blood:
3	chr5:90478679..90479429-chr5:90715013..90715972,2	K562	blood:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2367281	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90467600-90485600	Weak transcription	Fetal Intestine Small	intestine
2	chr5:90473200-90479400	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:90473400-90485600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:90473800-90479400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:90475600-90479000	Weak transcription	NHLF	lung
6	chr5:90477400-90479800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr5:90477400-90480000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:90477600-90480400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:90478000-90480000	Enhancers	Primary B cells from peripheral blood	blood
10	chr5:90478000-90480200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr5:90478200-90479000	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr5:90478200-90479000	Enhancers	Duodenum Mucosa	Duodenum
13	chr5:90478200-90479000	Enhancers	HSMM	muscle
14	chr5:90478200-90479200	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr5:90478200-90479800	Enhancers	Placenta	Placenta
16	chr5:90478200-90480000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr5:90478200-90480000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:90478200-90480000	Enhancers	Fetal Muscle Leg	muscle
19	chr5:90478200-90480200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr5:90478400-90479000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:90478400-90479200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:90478400-90479200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:90478400-90479800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr5:90478400-90479800	Enhancers	Adipose Nuclei	Adipose
25	chr5:90478400-90479800	Enhancers	Psoas Muscle	Psoas
26	chr5:90478400-90480000	Enhancers	Stomach Mucosa	stomach
27	chr5:90478400-90480000	Enhancers	GM12878-XiMat	blood
28	chr5:90478400-90480200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr5:90478400-90480200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr5:90478400-90480200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr5:90478400-90480200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr5:90478600-90479000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:90478600-90479000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr5:90478600-90479000	Enhancers	Osteobl	bone
35	chr5:90478600-90479200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr5:90478600-90479200	Enhancers	HSMMtube	muscle
37	chr5:90478600-90479800	Enhancers	Primary T cells from cord blood	blood
38	chr5:90478600-90480200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr5:90478600-90486000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:90478800-90479000	Enhancers	K562	blood
41	chr5:90478800-90479200	Enhancers	Fetal Muscle Trunk	muscle
42	chr5:90478800-90479600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:90478800-90479800	Enhancers	H1 Cell Line	embryonic stem cell
44	chr5:90478800-90480000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr5:90478800-90485200	Weak transcription	NHDF-Ad	bronchial

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