Variant report

Variant	rs2367797
Chromosome Location	chr2:180724510-180724511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10153833	0.84[CEU][hapmap]
rs10169684	0.83[EUR][1000 genomes]
rs10211004	0.85[CEU][hapmap];0.83[TSI][hapmap]
rs10930887	0.89[CEU][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12053220	0.81[JPT][hapmap]
rs12053223	0.81[JPT][hapmap]
rs12053553	0.81[JPT][hapmap]
rs12328338	0.88[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.85[ASN][1000 genomes]
rs12465175	0.90[JPT][hapmap]
rs13014995	0.85[CEU][hapmap]
rs1352111	0.85[CEU][hapmap]
rs1383413	1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1486233	0.85[ASN][1000 genomes]
rs165374	0.85[CEU][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]
rs165379	0.84[CEU][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs165380	0.85[CEU][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs165381	0.80[EUR][1000 genomes]
rs16867045	0.93[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs187745	0.85[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs194674	0.89[CEU][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2170240	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2219670	0.88[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.85[ASN][1000 genomes]
rs259831	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs259833	0.89[CEU][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs259849	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2630539	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs357712	0.85[CEU][hapmap]
rs357714	0.85[CEU][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap]
rs4894131	0.88[CEU][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs6433810	0.90[JPT][hapmap]
rs6433811	0.81[JPT][hapmap]
rs6725456	0.84[CEU][hapmap]
rs6752731	0.92[MEX][hapmap];0.84[TSI][hapmap]
rs7557122	0.92[MEX][hapmap];0.84[TSI][hapmap]
rs7597666	0.92[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv875472	chr2:180696414-181024926	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv875473	chr2:180696414-181055597	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180706800-180724800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180722200-180725200	Active TSS	Brain Anterior Caudate	brain
3	chr2:180723600-180724800	Enhancers	Liver	Liver
4	chr2:180723600-180726800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:180723800-180725000	Active TSS	Fetal Brain Female	brain
6	chr2:180724200-180726600	Active TSS	Stomach Smooth Muscle	stomach
7	chr2:180724400-180724600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:180724400-180725600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
9	chr2:180724400-180727000	Active TSS	Right Atrium	heart

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