Variant report

Variant	rs2367954
Chromosome Location	chr2:33905887-33905888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17013694	1.00[AMR][1000 genomes]
rs55840293	0.90[AFR][1000 genomes]
rs73927897	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73928959	1.00[AMR][1000 genomes]
rs73929503	0.81[AFR][1000 genomes]
rs73929510	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33904000-33906000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:33904400-33906000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:33904400-33906000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:33904400-33906200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:33904600-33906200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:33905400-33906200	Enhancers	Brain Germinal Matrix	brain
7	chr2:33905400-33906200	Enhancers	Fetal Brain Male	brain
8	chr2:33905400-33906600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:33905600-33906000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:33905600-33906000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:33905600-33906000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:33905600-33906000	Enhancers	Brain Hippocampus Middle	brain
13	chr2:33905600-33906000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:33905600-33906000	Enhancers	Ovary	ovary
15	chr2:33905600-33906200	Enhancers	Fetal Muscle Trunk	muscle
16	chr2:33905600-33906600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:33905800-33906000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
18	chr2:33905800-33906000	Enhancers	Brain Anterior Caudate	brain
19	chr2:33905800-33906000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr2:33905800-33906000	Enhancers	Brain Substantia Nigra	brain
21	chr2:33905800-33906200	Flanking Active TSS	Brain Cingulate Gyrus	brain
22	chr2:33905800-33906400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr2:33905800-33906400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr2:33905800-33906400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr2:33905800-33906400	Flanking Active TSS	Fetal Brain Female	brain
26	chr2:33905800-33906600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr2:33905800-33906600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:33905800-33907800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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