Variant report

Variant	rs73927897
Chromosome Location	chr2:33905212-33905213
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17013694	1.00[AMR][1000 genomes]
rs2367954	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55840293	0.90[AFR][1000 genomes]
rs73928959	1.00[AMR][1000 genomes]
rs73929503	0.81[AFR][1000 genomes]
rs73929510	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33903800-33905400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:33903800-33905800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:33904000-33905600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:33904000-33905800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:33904000-33906000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:33904200-33905800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:33904400-33906000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:33904400-33906000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:33904400-33906200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:33904600-33906200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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