Variant report

Variant	rs236855
Chromosome Location	chr6:79341891-79341892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1012026	0.96[ASN][1000 genomes]
rs1012027	0.98[ASN][1000 genomes]
rs10455349	0.99[ASN][1000 genomes]
rs10806133	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10943547	0.96[ASN][1000 genomes]
rs10943548	0.97[ASN][1000 genomes]
rs10943549	0.96[ASN][1000 genomes]
rs12197137	0.99[ASN][1000 genomes]
rs12201840	0.99[ASN][1000 genomes]
rs12209692	0.98[ASN][1000 genomes]
rs12210711	0.99[ASN][1000 genomes]
rs12213548	0.96[ASN][1000 genomes]
rs12530353	0.99[ASN][1000 genomes]
rs12530368	0.93[ASN][1000 genomes]
rs1395446	0.98[ASN][1000 genomes]
rs1395447	0.96[ASN][1000 genomes]
rs1407102	0.96[ASN][1000 genomes]
rs1567095	0.99[ASN][1000 genomes]
rs1567096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1567097	0.94[ASN][1000 genomes]
rs1570075	0.94[ASN][1000 genomes]
rs16890224	0.98[ASN][1000 genomes]
rs16890230	0.98[ASN][1000 genomes]
rs1995650	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.96[ASN][1000 genomes]
rs2063045	0.99[ASN][1000 genomes]
rs2202588	0.88[ASN][1000 genomes]
rs2321764	1.00[ASN][1000 genomes]
rs236852	0.89[ASN][1000 genomes]
rs236853	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs236859	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs236882	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs236884	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs236886	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs236888	0.83[EUR][1000 genomes]
rs500391	0.85[EUR][1000 genomes]
rs5018093	0.99[ASN][1000 genomes]
rs699182	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs717364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7755578	0.97[ASN][1000 genomes]
rs7763429	0.92[ASN][1000 genomes]
rs9361413	0.92[ASN][1000 genomes]
rs9361414	0.92[ASN][1000 genomes]
rs984157	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886300	chr6:79129963-79341891	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79339600-79345600	Weak transcription	Fetal Brain Female	brain
2	chr6:79341600-79342000	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links