Variant report

Variant	rs236859
Chromosome Location	chr6:79333116-79333117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79325429..79327515-chr6:79331276..79333444,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1012026	0.96[ASN][1000 genomes]
rs1012027	0.99[ASN][1000 genomes]
rs10455349	1.00[ASN][1000 genomes]
rs10806133	0.95[ASN][1000 genomes]
rs10943547	0.97[ASN][1000 genomes]
rs10943548	0.98[ASN][1000 genomes]
rs10943549	0.96[ASN][1000 genomes]
rs12197137	1.00[ASN][1000 genomes]
rs12201840	0.98[ASN][1000 genomes]
rs12209692	0.99[ASN][1000 genomes]
rs12210711	1.00[ASN][1000 genomes]
rs12213548	0.96[ASN][1000 genomes]
rs12530353	1.00[ASN][1000 genomes]
rs12530368	0.94[ASN][1000 genomes]
rs1395446	0.99[ASN][1000 genomes]
rs1395447	0.97[ASN][1000 genomes]
rs1407102	0.96[ASN][1000 genomes]
rs1567095	1.00[ASN][1000 genomes]
rs1567096	0.95[ASN][1000 genomes]
rs1567097	0.95[ASN][1000 genomes]
rs1570075	0.95[ASN][1000 genomes]
rs16890224	0.99[ASN][1000 genomes]
rs16890230	0.99[ASN][1000 genomes]
rs1995650	0.97[ASN][1000 genomes]
rs2063045	1.00[ASN][1000 genomes]
rs2202588	0.87[ASN][1000 genomes]
rs2321764	0.99[ASN][1000 genomes]
rs236852	0.89[ASN][1000 genomes]
rs236853	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236855	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs236882	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs236884	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs236886	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5018093	0.99[ASN][1000 genomes]
rs699182	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs717364	0.97[ASN][1000 genomes]
rs7755578	0.98[ASN][1000 genomes]
rs7763429	0.91[ASN][1000 genomes]
rs9361413	0.91[ASN][1000 genomes]
rs9361414	0.91[ASN][1000 genomes]
rs984157	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886300	chr6:79129963-79341891	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv522646	chr6:79185106-79333988	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1028767	chr6:79200713-79341224	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79325600-79333400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:79325800-79333400	Weak transcription	NHEK	skin

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