Variant report

Variant	rs237036
Chromosome Location	chr6:149708368-149708369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149706464..149708710-chr6:149709911..149712355,2	MCF-7	breast:
2	chr6:149708149..149710549-chr6:149711025..149713026,3	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12110948	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs173140	0.85[EUR][1000 genomes]
rs2031450	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs236997	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs236998	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs236999	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs237000	0.92[EUR][1000 genomes]
rs237006	0.86[EUR][1000 genomes]
rs237007	0.82[EUR][1000 genomes]
rs237008	0.85[EUR][1000 genomes]
rs237013	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs237014	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs237015	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs237017	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs237020	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237022	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs237027	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237030	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237031	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237032	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237033	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237037	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365469	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs389996	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs425540	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs473864	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs474587	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs474726	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs480670	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs483877	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs484969	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs500860	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs505765	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs506573	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs506779	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs520551	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs520683	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs524092	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs537843	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs538706	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs543711	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs548083	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs548925	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs551627	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs558044	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs559848	0.87[EUR][1000 genomes]
rs567816	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs569730	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs573684	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs576022	0.87[EUR][1000 genomes]
rs579666	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs580499	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6916134	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6926840	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742990	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752947	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149682600-149709200	Weak transcription	Psoas Muscle	Psoas
2	chr6:149686000-149709000	Weak transcription	Stomach Mucosa	stomach
3	chr6:149687800-149726400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:149695400-149709600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:149697600-149709000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:149697600-149713600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:149698400-149709600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:149700400-149709000	Weak transcription	Fetal Heart	heart
9	chr6:149700400-149728400	Weak transcription	Hela-S3	cervix
10	chr6:149700400-149732400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:149700600-149709200	Weak transcription	Pancreas	Pancrea
12	chr6:149700600-149721200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:149700600-149721200	Weak transcription	Colonic Mucosa	Colon
14	chr6:149700600-149721200	Weak transcription	Right Ventricle	heart
15	chr6:149700600-149730800	Weak transcription	Fetal Brain Male	brain
16	chr6:149700800-149721000	Weak transcription	K562	blood
17	chr6:149700800-149721200	Weak transcription	Aorta	Aorta
18	chr6:149700800-149732800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:149701000-149710800	Weak transcription	NHDF-Ad	bronchial
20	chr6:149701200-149710200	Weak transcription	Esophagus	oesophagus
21	chr6:149701200-149721200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:149701400-149709000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:149701400-149710800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:149701400-149717400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:149701400-149717800	Weak transcription	Fetal Kidney	kidney
26	chr6:149701400-149721200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:149701400-149730800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:149701400-149734200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:149701600-149712600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:149701600-149733600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr6:149702200-149709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:149702400-149718800	Weak transcription	HUVEC	blood vessel
33	chr6:149702400-149721200	Weak transcription	Fetal Brain Female	brain
34	chr6:149703000-149716000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:149703200-149709200	Weak transcription	Gastric	stomach
36	chr6:149703200-149709200	Weak transcription	Ovary	ovary
37	chr6:149703200-149709400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:149703200-149717200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:149703200-149718400	Weak transcription	Thymus	Thymus
40	chr6:149703200-149719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:149703200-149720400	Weak transcription	Brain Angular Gyrus	brain
42	chr6:149703200-149721200	Weak transcription	Spleen	Spleen
43	chr6:149703400-149708800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:149703400-149709000	Weak transcription	Brain Substantia Nigra	brain
45	chr6:149703400-149709200	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:149703400-149709400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:149703400-149709600	Strong transcription	Fetal Thymus	thymus
48	chr6:149703400-149720000	Weak transcription	Adipose Nuclei	Adipose
49	chr6:149703400-149721000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:149703400-149721200	Weak transcription	HSMMtube	muscle

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