Variant report

Variant	rs237006
Chromosome Location	chr6:149768451-149768452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149767445..149770252-chr6:149772541..149774258,2	MCF-7	breast:

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs11155656	0.86[ASN][1000 genomes]
rs11155657	0.85[ASN][1000 genomes]
rs112225	0.86[ASN][1000 genomes]
rs12110948	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12190660	0.86[ASN][1000 genomes]
rs173140	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1737336	0.84[ASN][1000 genomes]
rs1737337	0.85[ASN][1000 genomes]
rs1749227	0.86[ASN][1000 genomes]
rs1768341	0.83[ASN][1000 genomes]
rs1999970	0.86[ASN][1000 genomes]
rs2031450	0.86[EUR][1000 genomes]
rs2095849	0.88[ASN][1000 genomes]
rs236997	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs236998	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs236999	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs237000	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs237007	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237008	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs237013	0.94[EUR][1000 genomes]
rs237014	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs237015	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs237017	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs237020	0.89[EUR][1000 genomes]
rs237022	0.85[EUR][1000 genomes]
rs237027	0.86[EUR][1000 genomes]
rs237030	0.86[EUR][1000 genomes]
rs237031	0.86[EUR][1000 genomes]
rs237032	0.86[EUR][1000 genomes]
rs237033	0.86[EUR][1000 genomes]
rs237036	0.86[EUR][1000 genomes]
rs237037	0.86[EUR][1000 genomes]
rs365469	0.89[EUR][1000 genomes]
rs367161	0.86[ASN][1000 genomes]
rs367812	0.86[ASN][1000 genomes]
rs370471	0.86[ASN][1000 genomes]
rs372994	0.86[ASN][1000 genomes]
rs373596	0.85[ASN][1000 genomes]
rs374616	0.85[ASN][1000 genomes]
rs376269	0.80[ASN][1000 genomes]
rs376757	0.86[ASN][1000 genomes]
rs377454	0.83[ASN][1000 genomes]
rs377532	0.86[ASN][1000 genomes]
rs378991	0.86[ASN][1000 genomes]
rs381793	0.86[ASN][1000 genomes]
rs382084	0.86[ASN][1000 genomes]
rs382720	0.80[ASN][1000 genomes]
rs383092	0.86[ASN][1000 genomes]
rs384163	0.86[ASN][1000 genomes]
rs384306	0.80[ASN][1000 genomes]
rs384913	0.86[ASN][1000 genomes]
rs385303	0.86[ASN][1000 genomes]
rs388335	0.83[ASN][1000 genomes]
rs389996	0.89[EUR][1000 genomes]
rs391875	0.80[ASN][1000 genomes]
rs392928	0.82[ASN][1000 genomes]
rs392932	0.82[ASN][1000 genomes]
rs393713	0.86[ASN][1000 genomes]
rs394375	0.86[ASN][1000 genomes]
rs395037	0.86[ASN][1000 genomes]
rs398159	0.80[ASN][1000 genomes]
rs403419	0.86[ASN][1000 genomes]
rs405486	0.85[ASN][1000 genomes]
rs407260	0.86[ASN][1000 genomes]
rs408451	0.86[ASN][1000 genomes]
rs409196	0.86[ASN][1000 genomes]
rs410579	0.86[ASN][1000 genomes]
rs411091	0.85[ASN][1000 genomes]
rs411308	0.86[ASN][1000 genomes]
rs414956	0.97[ASN][1000 genomes]
rs416044	0.84[ASN][1000 genomes]
rs416262	1.00[ASN][1000 genomes]
rs419562	0.84[ASN][1000 genomes]
rs419997	0.86[ASN][1000 genomes]
rs421037	0.99[ASN][1000 genomes]
rs425278	0.81[ASN][1000 genomes]
rs425540	0.89[EUR][1000 genomes]
rs430192	1.00[ASN][1000 genomes]
rs431362	0.84[ASN][1000 genomes]
rs432582	0.80[ASN][1000 genomes]
rs436645	0.85[ASN][1000 genomes]
rs437931	0.84[ASN][1000 genomes]
rs439369	0.86[ASN][1000 genomes]
rs439495	0.80[ASN][1000 genomes]
rs440613	0.86[ASN][1000 genomes]
rs450344	0.86[ASN][1000 genomes]
rs452586	0.86[ASN][1000 genomes]
rs473864	0.83[EUR][1000 genomes]
rs474587	0.83[EUR][1000 genomes]
rs474726	0.83[EUR][1000 genomes]
rs480670	0.82[EUR][1000 genomes]
rs483877	0.83[EUR][1000 genomes]
rs484969	0.83[EUR][1000 genomes]
rs499270	0.86[ASN][1000 genomes]
rs505765	0.83[EUR][1000 genomes]
rs506573	0.82[EUR][1000 genomes]
rs506779	0.83[EUR][1000 genomes]
rs520551	0.83[EUR][1000 genomes]
rs520683	0.83[EUR][1000 genomes]
rs524092	0.83[EUR][1000 genomes]
rs537843	0.83[EUR][1000 genomes]
rs538706	0.83[EUR][1000 genomes]
rs543489	0.86[ASN][1000 genomes]
rs543711	0.83[EUR][1000 genomes]
rs548083	0.83[EUR][1000 genomes]
rs548925	0.82[EUR][1000 genomes]
rs551627	0.82[EUR][1000 genomes]
rs558044	0.83[EUR][1000 genomes]
rs567816	0.83[EUR][1000 genomes]
rs569730	0.82[EUR][1000 genomes]
rs573684	0.83[EUR][1000 genomes]
rs579666	0.83[EUR][1000 genomes]
rs580499	0.81[EUR][1000 genomes]
rs602010	0.86[ASN][1000 genomes]
rs602094	0.86[ASN][1000 genomes]
rs611311	0.96[ASN][1000 genomes]
rs677525	0.81[ASN][1000 genomes]
rs6916134	0.86[EUR][1000 genomes]
rs6926840	0.81[EUR][1000 genomes]
rs7742990	0.86[EUR][1000 genomes]
rs7752947	0.86[EUR][1000 genomes]
rs786749	0.86[ASN][1000 genomes]
rs786750	0.87[ASN][1000 genomes]
rs786751	0.86[ASN][1000 genomes]
rs786757	0.82[ASN][1000 genomes]
rs814181	0.86[ASN][1000 genomes]
rs9485396	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149753400-149770000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:149753600-149769600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:149761600-149769600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:149762600-149770800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:149762800-149771000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:149763200-149770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:149763200-149771000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:149763200-149771400	Weak transcription	Pancreas	Pancrea
9	chr6:149764600-149768600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr6:149764800-149771400	Weak transcription	Spleen	Spleen
11	chr6:149765200-149771400	Weak transcription	Brain Anterior Caudate	brain
12	chr6:149766000-149769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:149766000-149771400	Weak transcription	Right Atrium	heart
14	chr6:149766200-149771000	Weak transcription	GM12878-XiMat	blood
15	chr6:149766200-149771200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:149766400-149768600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:149766600-149769800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:149766600-149773000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:149766800-149771000	Weak transcription	Fetal Heart	heart
20	chr6:149766800-149771400	Weak transcription	Left Ventricle	heart
21	chr6:149766800-149771600	Weak transcription	Lung	lung
22	chr6:149767400-149772800	Weak transcription	HepG2	liver
23	chr6:149767600-149769600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:149768400-149771600	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:149768400-149779400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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