The 2.0 version of rSNPBase

Variant report

Variant rs407260
Chromosome Location chr6:149783635-149783636
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:149769600-149787200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr6:149770000-149785200 Strong transcription Primary T helper cells fromperipheralblood blood
3 chr6:149772000-149788800 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr6:149772600-149787000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
5 chr6:149776200-149785200 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr6:149776200-149789600 Weak transcription Fetal Thymus thymus
7 chr6:149776400-149784400 Weak transcription Small Intestine intestine
8 chr6:149776400-149784800 Weak transcription HepG2 liver
9 chr6:149776400-149785200 Strong transcription Primary T cells fromperipheralblood blood
10 chr6:149776400-149785400 Weak transcription HSMMtube muscle
11 chr6:149776600-149785200 Weak transcription Colonic Mucosa Colon
12 chr6:149776800-149785200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr6:149776800-149785200 Weak transcription Rectal Smooth Muscle rectum
14 chr6:149776800-149785200 Weak transcription Hela-S3 cervix
15 chr6:149776800-149785400 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr6:149776800-149802000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr6:149778400-149785400 Weak transcription Gastric stomach
18 chr6:149778400-149787200 Weak transcription Spleen Spleen
19 chr6:149779000-149784800 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr6:149780000-149785200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
21 chr6:149780000-149785800 Strong transcription Primary T helper cells PMA-I stimulated --
22 chr6:149780800-149793400 Weak transcription Primary T cells from cord blood blood
23 chr6:149781000-149783800 Strong transcription Primary T regulatory cells fromperipheralblood blood
24 chr6:149781400-149784200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr6:149781400-149785200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr6:149781400-149785200 Weak transcription Osteobl bone
27 chr6:149781400-149785800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr6:149781400-149787000 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr6:149781400-149788800 Weak transcription Primary T killer memory cells from peripheral blood blood
30 chr6:149781400-149793800 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr6:149781800-149784600 Weak transcription Fetal Intestine Small intestine
32 chr6:149782200-149802000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr6:149782400-149784600 Strong transcription Primary T helper naive cells fromperipheralblood blood
34 chr6:149782600-149784400 Enhancers Stomach Mucosa stomach
35 chr6:149782800-149785200 Weak transcription GM12878-XiMat blood
36 chr6:149783000-149785000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr6:149783200-149787000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr6:149783200-149802400 Weak transcription Primary hematopoietic stem cells blood
39 chr6:149783400-149784800 Weak transcription Primary B cells from cord blood blood
40 chr6:149783400-149786800 Weak transcription Monocytes-CD14+_RO01746 blood
41 chr6:149783400-149788400 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr6:149783400-149789200 Genic enhancers Primary B cells from peripheral blood blood
43 chr6:149783600-149783800 Enhancers Duodenum Mucosa Duodenum
44 chr6:149783600-149784800 Weak transcription Primary monocytes fromperipheralblood blood
45 chr6:149783600-149786000 Strong transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015