Variant report

Variant	rs2370444
Chromosome Location	chr1:193624950-193624951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10921400	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12022959	0.80[AFR][1000 genomes]
rs12028044	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1556901	0.80[EUR][1000 genomes]
rs1578127	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2370445	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193622000-193627400	Weak transcription	Fetal Brain Male	brain
2	chr1:193624000-193627400	Weak transcription	Fetal Heart	heart
3	chr1:193624400-193627200	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:193624400-193628600	Weak transcription	Left Ventricle	heart
5	chr1:193624400-193629000	Weak transcription	Aorta	Aorta
6	chr1:193624600-193625400	Enhancers	Hela-S3	cervix
7	chr1:193624600-193627400	Weak transcription	Small Intestine	intestine
8	chr1:193624800-193626000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:193624800-193629000	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links