Variant report

Variant	rs2371311
Chromosome Location	chr2:212419186-212419187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10497945	0.99[EUR][1000 genomes]
rs10932385	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11894975	0.99[EUR][1000 genomes]
rs11899850	0.98[EUR][1000 genomes]
rs12622730	0.83[EUR][1000 genomes]
rs16846440	0.93[EUR][1000 genomes]
rs17335001	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17335057	0.87[ASN][1000 genomes]
rs17413281	0.87[ASN][1000 genomes]
rs1829618	0.88[EUR][1000 genomes]
rs1851200	0.93[EUR][1000 genomes]
rs35633854	0.99[EUR][1000 genomes]
rs56696344	0.99[EUR][1000 genomes]
rs61250365	1.00[ASN][1000 genomes]
rs62180215	0.98[EUR][1000 genomes]
rs62180216	0.98[EUR][1000 genomes]
rs62180219	0.99[EUR][1000 genomes]
rs6759048	0.93[EUR][1000 genomes]
rs73075186	0.93[EUR][1000 genomes]
rs7576111	0.97[EUR][1000 genomes]
rs7576673	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2753335	chr2:212322858-212424019	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv470512	chr2:212351667-212428192	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv460068	chr2:212355500-212428192	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv584319	chr2:212355500-212428192	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1006545	chr2:212362134-212419865	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212395400-212419200	Weak transcription	Aorta	Aorta
2	chr2:212411800-212419200	Weak transcription	Gastric	stomach
3	chr2:212419000-212419400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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