Variant report

Variant	rs16846440
Chromosome Location	chr2:212425554-212425555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10497945	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10497946	0.82[CHB][hapmap]
rs10932385	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs11885579	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11886732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11889107	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11894975	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11896454	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11899850	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12475861	1.00[JPT][hapmap]
rs12622730	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs13014132	1.00[JPT][hapmap]
rs13421680	0.82[JPT][hapmap]
rs16846427	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs16846435	0.82[CHB][hapmap]
rs16846443	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs16846460	0.82[JPT][hapmap]
rs17335001	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs1829618	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1851200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1879532	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs2371311	0.93[EUR][1000 genomes]
rs35633854	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56696344	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61250365	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62180215	0.93[EUR][1000 genomes]
rs62180216	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62180219	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6735769	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6759048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73985484	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7576111	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7576673	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs7595473	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv470512	chr2:212351667-212428192	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv460068	chr2:212355500-212428192	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv584319	chr2:212355500-212428192	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212419400-212451800	Weak transcription	Aorta	Aorta
2	chr2:212422800-212428800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:212423200-212426400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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