Variant report

Variant	rs11885579
Chromosome Location	chr2:212431529-212431530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10174916	0.81[EUR][1000 genomes]
rs10497945	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[ASN][1000 genomes]
rs10497946	0.83[CHD][hapmap]
rs10497947	0.83[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs11886732	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11889107	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11894975	0.91[ASN][1000 genomes]
rs11896454	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899850	0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs12475861	1.00[JPT][hapmap]
rs12622730	0.93[GIH][hapmap];0.82[MEX][hapmap]
rs12694242	0.80[MEX][hapmap];0.93[TSI][hapmap]
rs13014132	1.00[JPT][hapmap]
rs13421680	0.82[JPT][hapmap]
rs16846435	0.83[CHD][hapmap]
rs16846440	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16846476	0.83[CHD][hapmap]
rs17335001	0.81[MEX][hapmap]
rs17335057	0.94[CEU][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs17413281	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1829618	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1851200	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1879531	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs35633854	0.91[ASN][1000 genomes]
rs56696344	0.91[ASN][1000 genomes]
rs61250365	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180216	0.85[ASN][1000 genomes]
rs62180219	0.91[ASN][1000 genomes]
rs6732969	0.83[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs6735769	0.94[ASW][hapmap];0.83[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6737763	0.82[EUR][1000 genomes]
rs6759048	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73075186	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73985484	0.85[ASN][1000 genomes]
rs7576111	0.91[ASN][1000 genomes]
rs7576673	0.81[MEX][hapmap]
rs7595473	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212419400-212451800	Weak transcription	Aorta	Aorta
2	chr2:212426800-212437200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:212429000-212437200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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