Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10203821	1.00[CEU][hapmap]
rs10497945	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs10497946	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs11885579	0.83[CHD][hapmap]
rs11886732	0.82[CHB][hapmap]
rs11889107	1.00[CHB][hapmap]
rs11896454	0.83[CHD][hapmap]
rs11899850	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12475861	0.82[CHB][hapmap]
rs12694249	1.00[CEU][hapmap]
rs16846427	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16846440	0.82[CHB][hapmap]
rs16846443	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16846460	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16846476	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1829618	0.83[CHD][hapmap]
rs1851200	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs28380748	1.00[ASN][1000 genomes]
rs6435643	1.00[CEU][hapmap]
rs6435644	1.00[CEU][hapmap]
rs6435645	1.00[CEU][hapmap]
rs6435646	1.00[CEU][hapmap]
rs6435647	1.00[CEU][hapmap]
rs6435648	1.00[CEU][hapmap]
rs6435649	1.00[CEU][hapmap]
rs6435650	1.00[CEU][hapmap]
rs6707492	1.00[CEU][hapmap]
rs6735769	0.83[CHD][hapmap]
rs6759048	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs73075194	1.00[ASN][1000 genomes]
rs7422464	1.00[CEU][hapmap]
rs7557752	1.00[MEX][hapmap]
rs7595473	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv470512	chr2:212351667-212428192	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv460068	chr2:212355500-212428192	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv584319	chr2:212355500-212428192	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16846435	CXCL11	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212419400-212451800	Weak transcription	Aorta	Aorta
2	chr2:212422800-212428800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:212423200-212426400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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