Variant report

Variant	rs2372778
Chromosome Location	chr14:84988608-84988609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1449096	1.00[ASN][1000 genomes]
rs1551011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120043	1.00[EUR][1000 genomes]
rs17120050	1.00[EUR][1000 genomes]
rs17841070	1.00[EUR][1000 genomes]
rs2922628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2998296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2998297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60743202	0.85[ASN][1000 genomes]
rs7146147	0.85[ASN][1000 genomes]
rs72688807	1.00[EUR][1000 genomes]
rs72688811	1.00[EUR][1000 genomes]
rs72688812	1.00[EUR][1000 genomes]
rs72688813	1.00[EUR][1000 genomes]
rs72688815	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84987600-84991600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:84987800-85001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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