Variant report

Variant	rs72688815
Chromosome Location	chr14:84965584-84965585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1375450	0.89[ASN][1000 genomes]
rs1551011	1.00[EUR][1000 genomes]
rs17094379	0.89[ASN][1000 genomes]
rs17120010	0.89[ASN][1000 genomes]
rs17120043	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17841070	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372778	1.00[EUR][1000 genomes]
rs2922628	1.00[ASN][1000 genomes]
rs2998296	1.00[EUR][1000 genomes]
rs2998297	1.00[ASN][1000 genomes]
rs55798405	1.00[ASN][1000 genomes]
rs58840513	1.00[ASN][1000 genomes]
rs60436002	0.89[ASN][1000 genomes]
rs66541561	0.89[ASN][1000 genomes]
rs67378160	0.89[ASN][1000 genomes]
rs67803520	0.89[ASN][1000 genomes]
rs68173195	0.89[ASN][1000 genomes]
rs72687280	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72687282	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72687288	1.00[ASN][1000 genomes]
rs72687290	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72687292	1.00[ASN][1000 genomes]
rs72687293	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72687296	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72687297	1.00[ASN][1000 genomes]
rs72687298	1.00[ASN][1000 genomes]
rs72687300	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72687302	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72688804	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72688806	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72688807	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688808	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72688811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688812	1.00[EUR][1000 genomes]
rs72688813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688814	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72688883	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72688893	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72688898	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72690604	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72690616	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72690617	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72690619	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72690622	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72690624	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72706914	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72706915	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73372762	0.89[ASN][1000 genomes]
rs73372780	0.89[ASN][1000 genomes]
rs73373896	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84965000-84965600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr14:84965000-84966600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
3	chr14:84965200-84967200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr14:84965400-84965600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr14:84965400-84966600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr14:84965400-84966600	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links