Variant report

Variant	rs55798405
Chromosome Location	chr14:84950300-84950301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:84941421..84943706-chr14:84949512..84951375,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10151029	1.00[EUR][1000 genomes]
rs1375450	0.89[ASN][1000 genomes]
rs17094379	0.89[ASN][1000 genomes]
rs17120010	0.89[ASN][1000 genomes]
rs17120043	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17120050	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17841070	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2922628	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2998297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56014851	0.83[AFR][1000 genomes]
rs58321795	0.89[AFR][1000 genomes]
rs58840513	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59498545	0.89[AFR][1000 genomes]
rs59592595	0.89[AFR][1000 genomes]
rs60436002	0.89[ASN][1000 genomes]
rs66541561	0.89[ASN][1000 genomes]
rs67378160	0.89[ASN][1000 genomes]
rs67803520	0.89[ASN][1000 genomes]
rs68173195	0.89[ASN][1000 genomes]
rs7146147	1.00[EUR][1000 genomes]
rs72687280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687282	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687288	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72687290	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687297	1.00[ASN][1000 genomes]
rs72687298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688804	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688807	1.00[ASN][1000 genomes]
rs72688808	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688811	1.00[ASN][1000 genomes]
rs72688813	1.00[ASN][1000 genomes]
rs72688814	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688815	1.00[ASN][1000 genomes]
rs72688883	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688898	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690604	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690616	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690622	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72706914	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72706915	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73372762	0.89[ASN][1000 genomes]
rs73372780	0.89[ASN][1000 genomes]
rs73373896	0.89[ASN][1000 genomes]
rs74069972	0.89[AFR][1000 genomes]
rs74069976	0.89[AFR][1000 genomes]
rs74069998	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84947800-84951600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr14:84948400-84950600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:84948400-84950600	Enhancers	NH-A	brain
4	chr14:84948400-84951600	Enhancers	NHEK	skin
5	chr14:84948600-84950400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr14:84949000-84951200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:84949000-84951400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:84949200-84950600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:84949800-84950400	Enhancers	Brain Germinal Matrix	brain
10	chr14:84949800-84950800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:84949800-84950800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:84949800-84950800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:84949800-84951800	Enhancers	Hela-S3	cervix
14	chr14:84949800-84951800	Enhancers	HUVEC	blood vessel
15	chr14:84950000-84950400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:84950000-84950600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr14:84950000-84951400	Weak transcription	HSMM	muscle
18	chr14:84950200-84950400	Enhancers	Brain Hippocampus Middle	brain
19	chr14:84950200-84950600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:84950200-84951600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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