Variant report

Variant	rs59592595
Chromosome Location	chr14:84953510-84953511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55798405	0.89[AFR][1000 genomes]
rs56014851	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58321795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58840513	1.00[AFR][1000 genomes]
rs59498545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72687292	0.89[AFR][1000 genomes]
rs72687298	0.89[AFR][1000 genomes]
rs74069972	1.00[AFR][1000 genomes]
rs74069976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74069998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072237	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84950600-84965000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:84951000-84954200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:84951000-84959800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:84951600-84953800	Weak transcription	NHEK	skin
5	chr14:84951600-84954000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:84951800-84956200	Weak transcription	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links