Variant report

Variant	rs2374004
Chromosome Location	chr13:93043373-93043374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11070024	0.85[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.87[JPT][hapmap];0.89[TSI][hapmap]
rs1926604	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs1926613	0.86[CHB][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1926614	0.86[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap]
rs1926615	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs2296844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326944	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.86[TSI][hapmap]
rs9301804	0.85[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9516069	0.85[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9523647	0.82[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9523648	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.84[TSI][hapmap]
rs9523651	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap]
rs9589525	0.86[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900903	chr13:92999147-93043373	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2374004	SCARNA17	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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