Variant report

Variant	rs9589525
Chromosome Location	chr13:93026643-93026644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93026561..93029613-chr13:93041707..93044561,3	K562	blood:
2	chr13:93024437..93027101-chr13:93028065..93030296,2	K562	blood:
3	chr13:93026262..93028061-chr13:93041707..93043886,2	K562	blood:
4	chr13:93013213..93015773-chr13:93023566..93027348,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11070024	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1926603	0.82[YRI][hapmap]
rs1926604	0.89[CEU][hapmap];0.86[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap]
rs1926613	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1926614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs1926615	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs2296844	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs2374004	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs61973564	0.82[EUR][1000 genomes]
rs7326944	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7329163	0.80[YRI][hapmap]
rs9301803	0.84[CEU][hapmap]
rs9301804	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9516069	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523646	0.81[YRI][hapmap]
rs9523647	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9523648	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9523651	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs9523654	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9523655	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9523656	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9523661	0.86[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv456068	chr13:92961151-93038913	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv562727	chr13:92961151-93038913	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv900903	chr13:92999147-93043373	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv976254	chr13:93007578-93034690	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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