Variant report

Variant	rs2374062
Chromosome Location	chr12:103778017-103778018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10161272	0.84[ASN][1000 genomes]
rs10745962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10745963	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs10745964	0.84[ASN][1000 genomes]
rs10745965	0.84[ASN][1000 genomes]
rs10778239	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10778240	0.88[CEU][hapmap];0.83[CHB][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs10778241	0.84[ASN][1000 genomes]
rs10778244	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs11111555	0.86[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs1317015	1.00[CEU][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2374045	0.86[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs2888729	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6539072	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7295887	0.84[ASN][1000 genomes]
rs7312095	0.84[ASN][1000 genomes]
rs7313836	0.84[ASN][1000 genomes]
rs7967003	0.88[CEU][hapmap];0.83[CHB][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs7970506	0.84[ASN][1000 genomes]
rs7975406	0.98[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7976887	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7980116	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1795884	chr12:103772579-103788340	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103707200-103786400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103763600-103786400	Weak transcription	Primary B cells from peripheral blood	blood

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