Variant report

Variant	rs7295887
Chromosome Location	chr12:103790193-103790194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10161272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10745962	0.84[ASN][1000 genomes]
rs10745963	0.81[ASN][1000 genomes]
rs10745964	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10745965	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778240	0.81[ASN][1000 genomes]
rs10778241	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778244	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778246	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10860997	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861000	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861005	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861013	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10861014	0.80[AMR][1000 genomes]
rs10861015	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10861016	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11111551	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11111555	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11111556	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11111572	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11111579	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11111582	0.83[EUR][1000 genomes]
rs1320345	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2374045	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2374056	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2374057	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2374062	0.84[ASN][1000 genomes]
rs2374065	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2374078	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2888733	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6539073	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7298211	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7300757	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7301460	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7302890	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7303147	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7304308	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7312095	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313836	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313920	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7952759	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7967003	0.81[ASN][1000 genomes]
rs7967288	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7970043	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7970506	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103787000-103790400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103789200-103794800	Weak transcription	Primary T cells from cord blood	blood
3	chr12:103789800-103792000	Strong transcription	Primary B cells from peripheral blood	blood

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