Variant report

Variant	rs2374065
Chromosome Location	chr12:103795144-103795145
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103794502..103795818-chr12:103897463..103898386,6	MCF-7	breast:
2	chr12:103794543..103795432-chr12:103917954..103918672,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10161272	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10507166	0.83[CEU][hapmap]
rs10745964	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10745965	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10778241	0.91[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10778244	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10778246	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10778253	0.95[CEU][hapmap]
rs10860997	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10861000	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861005	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861013	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10861015	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10861016	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11111551	0.83[AMR][1000 genomes]
rs11111555	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11111556	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11111572	0.94[EUR][1000 genomes]
rs11111579	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11111582	0.83[EUR][1000 genomes]
rs1317015	0.84[CHB][hapmap]
rs1320345	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2374045	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2374056	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2374057	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2374078	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2888733	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4408393	0.84[ASN][1000 genomes]
rs6539072	0.84[CHB][hapmap]
rs6539073	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7295887	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7298211	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7300757	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7301460	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7302890	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7303147	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7304308	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7305704	0.91[CEU][hapmap]
rs7312095	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7313836	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7313920	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7952759	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7967288	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7970043	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7970506	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103791400-103798400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103794000-103795600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr12:103794000-103795800	Enhancers	Fetal Thymus	thymus
4	chr12:103794400-103795600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:103794400-103795600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:103794400-103795600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:103794600-103795200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr12:103794800-103795200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr12:103794800-103795200	Strong transcription	Primary T cells from cord blood	blood
10	chr12:103794800-103795600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr12:103794800-103795800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:103795000-103795200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr12:103795000-103796000	Enhancers	HMEC	breast
14	chr12:103795000-103798600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr12:103795000-103798600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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