Variant report

Variant	rs10861016
Chromosome Location	chr12:103840005-103840006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10161272	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10507166	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10735387	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10745964	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10745965	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10778241	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10778244	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10778246	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10778257	0.83[EUR][1000 genomes]
rs10860997	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10861000	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10861005	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861013	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861014	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861015	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861022	0.82[EUR][1000 genomes]
rs10861025	0.82[EUR][1000 genomes]
rs11111555	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11111556	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11111572	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11111579	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11111582	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1320345	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2374045	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2374056	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2374057	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2374065	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2374078	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2888733	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4597156	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6539073	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7137784	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7295887	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7298211	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7300757	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7301460	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7302890	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7303147	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7304308	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7305169	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7312095	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7313836	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7313920	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7952759	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7961410	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7967288	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7970043	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7970506	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3338592	chr12:103817534-103849094	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3498252	chr12:103838998-103847126	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3498263	chr12:103839023-103847123	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3498274	chr12:103839023-103847123	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv14469	chr12:103839074-103846962	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103838400-103840400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr12:103838800-103840200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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