Variant report

Variant	rs7961410
Chromosome Location	chr12:103860809-103860810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10507166	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10735387	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10778244	0.86[CHB][hapmap]
rs10778253	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs10778257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10861005	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10861013	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10861015	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10861016	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10861022	0.81[CHB][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10861025	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11111555	0.86[CHB][hapmap]
rs11111556	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11111579	0.82[EUR][1000 genomes]
rs11111582	0.82[EUR][1000 genomes]
rs1320345	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2374045	0.86[CHB][hapmap]
rs2374056	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2374078	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2888733	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4597156	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7136280	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7137784	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7298211	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7301460	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7302890	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7303147	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7304308	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7305169	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7305704	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7952759	1.00[CHB][hapmap];0.89[JPT][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103852200-103865400	Weak transcription	Primary T cells from cord blood	blood
2	chr12:103858800-103863800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:103860600-103861200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links