Variant report

Variant	rs10778257
Chromosome Location	chr12:103872172-103872173
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103863978..103866213-chr12:103870731..103872426,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PAH-2	chr12:103872127-103872225	NONHSAT030368
2	lnc-PAH-2	chr12:103872127-103872225	NONHSAT030371
3	lnc-PAH-2	chr12:103872127-103872225	NR_103526
4	lnc-PAH-2	chr12:103872127-103872225	NONHSAT030375
5	lnc-PAH-2	chr12:103872127-103872225	NONHSAT030372

No data

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10507166	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10735387	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10778244	0.86[CHB][hapmap]
rs10778253	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861005	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10861013	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10861015	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10861016	0.83[EUR][1000 genomes]
rs10861022	0.86[CHB][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861025	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11111555	0.86[CHB][hapmap]
rs11111556	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11111579	0.80[EUR][1000 genomes]
rs11111582	0.80[EUR][1000 genomes]
rs1320345	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2374045	0.86[CHB][hapmap]
rs2374056	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2374078	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2888733	0.83[EUR][1000 genomes]
rs4597156	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7136280	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7137784	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7298211	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7301460	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7302890	1.00[CHB][hapmap];0.96[JPT][hapmap]
rs7303147	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7304308	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7305169	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7305704	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7952759	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap]
rs7961410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103863800-103876200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr12:103864600-103887400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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