Variant report

Variant	rs10507166
Chromosome Location	chr12:103865213-103865214
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103863978..103866213-chr12:103870731..103872426,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10735387	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10778244	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs10778253	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10778257	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861005	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10861013	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861015	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861016	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861022	0.82[CHB][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861025	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11111555	0.83[CEU][hapmap];0.87[CHB][hapmap]
rs11111556	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1320345	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2374045	0.83[CEU][hapmap];0.87[CHB][hapmap]
rs2374056	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2374065	0.83[CEU][hapmap]
rs2374078	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2888733	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4597156	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7136280	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7137784	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7298211	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7301460	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7302890	0.84[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap]
rs7303147	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7304308	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7305169	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7305704	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7952759	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap]
rs7961410	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103852200-103865400	Weak transcription	Primary T cells from cord blood	blood
2	chr12:103863800-103865400	Enhancers	HMEC	breast
3	chr12:103863800-103865600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:103863800-103876200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:103864200-103865600	Enhancers	Primary B cells from peripheral blood	blood
6	chr12:103864600-103887400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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