Variant report

Variant	rs2375087
Chromosome Location	chr11:64702815-64702816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64683512..64686373-chr11:64701129..64703249,2	MCF-7	breast:
2	chr11:64701027..64702913-chr11:64893913..64895958,2	K562	blood:
3	chr11:64681545..64685255-chr11:64700864..64703818,3	K562	blood:
4	chr11:64691374..64695669-chr11:64701131..64705582,6	MCF-7	breast:
5	chr11:64689194..64695395-chr11:64699461..64704301,10	K562	blood:
6	chr11:64645500..64648132-chr11:64701780..64703587,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110046	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000110047	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10897540	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs11231908	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418262	0.96[YRI][hapmap]
rs3741392	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56719440	0.82[AMR][1000 genomes]
rs7106136	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
2	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
3	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64693000-64703000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:64693000-64703000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:64693000-64703000	Weak transcription	Fetal Kidney	kidney
4	chr11:64693000-64703000	Weak transcription	K562	blood
5	chr11:64693000-64703600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:64693600-64703000	Weak transcription	Stomach Mucosa	stomach
7	chr11:64693800-64704400	Weak transcription	Right Atrium	heart
8	chr11:64694000-64703000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:64694000-64703000	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:64694200-64703000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:64694200-64703000	Strong transcription	Brain Inferior Temporal Lobe	brain
12	chr11:64694200-64703000	Strong transcription	Colonic Mucosa	Colon
13	chr11:64694200-64703000	Weak transcription	GM12878-XiMat	blood
14	chr11:64694200-64703200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:64694200-64703200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:64694400-64703000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:64694400-64703000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:64694400-64703000	Strong transcription	NHEK	skin
19	chr11:64694400-64703200	Strong transcription	Adipose Nuclei	Adipose
20	chr11:64694600-64703000	Strong transcription	Liver	Liver
21	chr11:64694600-64703200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:64694800-64703600	Strong transcription	Spleen	Spleen
23	chr11:64695200-64703400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:64697200-64703400	Strong transcription	Primary T cells from cord blood	blood
25	chr11:64697800-64703400	Strong transcription	NHLF	lung
26	chr11:64698200-64703000	Strong transcription	Lung	lung
27	chr11:64699000-64705600	Weak transcription	HUVEC	blood vessel
28	chr11:64699600-64703000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:64699800-64703000	Weak transcription	HSMM	muscle
30	chr11:64699800-64703800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:64700000-64703400	Weak transcription	NHDF-Ad	bronchial
32	chr11:64700600-64703400	Weak transcription	Dnd41	blood
33	chr11:64700800-64703000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:64700800-64703000	Weak transcription	Fetal Lung	lung
35	chr11:64700800-64704400	Weak transcription	Brain Angular Gyrus	brain
36	chr11:64700800-64704800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:64700800-64706200	Weak transcription	HSMMtube	muscle
38	chr11:64701000-64703200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:64701000-64703400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:64701000-64703400	Enhancers	Fetal Intestine Large	intestine
41	chr11:64701000-64704000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:64701000-64704000	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr11:64701000-64705200	Weak transcription	NH-A	brain
44	chr11:64701200-64703400	Weak transcription	Fetal Thymus	thymus
45	chr11:64701200-64703600	Weak transcription	Osteobl	bone
46	chr11:64701200-64704000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:64701200-64705200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:64701400-64703200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:64701400-64704000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:64701400-64704600	Weak transcription	Primary B cells from peripheral blood	blood

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