Variant report

Variant	rs3741392
Chromosome Location	chr11:64701030-64701031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64697755..64701101-chr11:64701651..64703886,3	MCF-7	breast:
2	chr11:64701027..64702913-chr11:64893913..64895958,2	K562	blood:
3	chr11:64681545..64685255-chr11:64700864..64703818,3	K562	blood:
4	chr11:64645778..64647784-chr11:64698731..64701222,2	K562	blood:
5	chr11:64689194..64695395-chr11:64699461..64704301,10	K562	blood:
6	chr11:64700459..64702214-chr11:64704518..64706728,2	K562	blood:
7	chr11:64621756..64624358-chr11:64698896..64701466,2	K562	blood:

Variant related genes	Relation type
ENSG00000110047	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000149735	Chromatin interaction
ENSG00000110046	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10897540	0.84[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.84[YRI][hapmap]
rs11231908	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12418262	0.84[YRI][hapmap]
rs2375087	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56658504	0.87[AFR][1000 genomes]
rs56719440	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs733303	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
2	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
4	nsv897704	chr11:64584987-64701030	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
5	nsv897705	chr11:64591679-64701030	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
6	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
7	nsv897707	chr11:64600002-64701030	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
8	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
9	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64692800-64702200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:64693000-64702000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:64693000-64702600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:64693000-64703000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:64693000-64703000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:64693000-64703000	Weak transcription	Fetal Kidney	kidney
7	chr11:64693000-64703000	Weak transcription	K562	blood
8	chr11:64693000-64703600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:64693200-64701400	Weak transcription	Fetal Heart	heart
10	chr11:64693200-64702800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:64693200-64702800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:64693600-64701400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:64693600-64703000	Weak transcription	Stomach Mucosa	stomach
14	chr11:64693800-64704400	Weak transcription	Right Atrium	heart
15	chr11:64694000-64702200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:64694000-64702600	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:64694000-64702800	Strong transcription	Fetal Brain Female	brain
18	chr11:64694000-64702800	Strong transcription	Fetal Stomach	stomach
19	chr11:64694000-64702800	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:64694000-64703000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:64694000-64703000	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:64694200-64701600	Strong transcription	Colon Smooth Muscle	Colon
23	chr11:64694200-64701800	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:64694200-64702000	Strong transcription	Aorta	Aorta
25	chr11:64694200-64702000	Strong transcription	Left Ventricle	heart
26	chr11:64694200-64702200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:64694200-64702400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:64694200-64702400	Strong transcription	Gastric	stomach
29	chr11:64694200-64703000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:64694200-64703000	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr11:64694200-64703000	Strong transcription	Colonic Mucosa	Colon
32	chr11:64694200-64703000	Weak transcription	GM12878-XiMat	blood
33	chr11:64694200-64703200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:64694200-64703200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:64694400-64701400	Strong transcription	Primary B cells from peripheral blood	blood
36	chr11:64694400-64701400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:64694400-64701600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:64694400-64702400	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:64694400-64702600	Weak transcription	Fetal Brain Male	brain
40	chr11:64694400-64702600	Strong transcription	Fetal Muscle Trunk	muscle
41	chr11:64694400-64702600	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:64694400-64702800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:64694400-64702800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:64694400-64702800	Strong transcription	Brain Germinal Matrix	brain
45	chr11:64694400-64702800	Strong transcription	Esophagus	oesophagus
46	chr11:64694400-64702800	Strong transcription	Right Ventricle	heart
47	chr11:64694400-64702800	Strong transcription	Stomach Smooth Muscle	stomach
48	chr11:64694400-64703000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:64694400-64703000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:64694400-64703000	Strong transcription	NHEK	skin

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