Variant report

Variant	rs2375930
Chromosome Location	chr9:86090064-86090065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11140097	1.00[EUR][1000 genomes]
rs12350698	1.00[EUR][1000 genomes]
rs12352281	1.00[EUR][1000 genomes]
rs34562579	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4507851	1.00[YRI][hapmap]
rs4515625	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4515626	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4520247	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4636277	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7019064	1.00[EUR][1000 genomes]
rs7022499	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
2	chr9:86085000-86090800	Enhancers	HepG2	liver
3	chr9:86087000-86092400	Weak transcription	Psoas Muscle	Psoas
4	chr9:86089800-86106600	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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