Variant report

Variant	rs7022499
Chromosome Location	chr9:86157459-86157460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11140097	1.00[EUR][1000 genomes]
rs12350698	1.00[EUR][1000 genomes]
rs12352281	1.00[EUR][1000 genomes]
rs2375930	1.00[EUR][1000 genomes]
rs34562579	1.00[EUR][1000 genomes]
rs4515625	1.00[EUR][1000 genomes]
rs4515626	1.00[EUR][1000 genomes]
rs4520247	1.00[EUR][1000 genomes]
rs4636277	1.00[EUR][1000 genomes]
rs7019064	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86153800-86158200	Weak transcription	Aorta	Aorta
2	chr9:86154200-86159000	Weak transcription	NHDF-Ad	bronchial
3	chr9:86154200-86159200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:86154400-86158800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:86154400-86159000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:86154400-86159000	Weak transcription	Adipose Nuclei	Adipose
7	chr9:86154400-86159200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:86154600-86158600	Weak transcription	Left Ventricle	heart
9	chr9:86154600-86158800	Weak transcription	Hela-S3	cervix
10	chr9:86154600-86159000	Weak transcription	Right Ventricle	heart
11	chr9:86154600-86159000	Weak transcription	HepG2	liver
12	chr9:86154600-86159200	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links