Variant report

Variant	rs2377597
Chromosome Location	chr12:8981527-8981528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:8973982..8976690-chr12:8980439..8982318,2	MCF-7	breast:
2	chr12:8975039..8977300-chr12:8980346..8983118,2	MCF-7	breast:
3	chr12:8971104..8974945-chr12:8980810..8983222,3	MCF-7	breast:
4	chr12:8980074..8981757-chr12:8983950..8986667,2	MCF-7	breast:
5	chr12:8980443..8982182-chr12:8987390..8989439,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166535	Chromatin interaction
ENSG00000256904	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11047510	0.85[EUR][1000 genomes]
rs12823255	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17729632	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17802399	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1894814	0.80[EUR][1000 genomes]
rs2377598	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4883181	0.92[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883182	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883183	0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883185	0.86[AMR][1000 genomes]
rs4883186	0.80[EUR][1000 genomes]
rs4883187	1.00[CEU][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6487390	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7305259	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7957179	0.83[EUR][1000 genomes]
rs7969068	0.89[ASN][1000 genomes]
rs7970580	0.89[CEU][hapmap]
rs7979289	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8976800-8984000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:8976800-8985000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:8979000-8995400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:8979200-8983800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:8979200-8985400	Enhancers	Placenta	Placenta
6	chr12:8979600-8982600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr12:8979600-8983200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:8979800-8982600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr12:8979800-8982600	Enhancers	HMEC	breast
10	chr12:8979800-8982600	Enhancers	NHEK	skin
11	chr12:8979800-8983400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:8980200-8982600	Enhancers	K562	blood
13	chr12:8980400-8981600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr12:8980400-8982000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:8980400-8982600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:8980600-8984200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr12:8980600-8985800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr12:8980800-8982000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr12:8980800-8984600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr12:8981000-8981600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr12:8981000-8981600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:8981000-8981800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr12:8981000-8982000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr12:8981000-8982200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr12:8981000-8984600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr12:8981200-8981800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr12:8981200-8981800	Enhancers	Esophagus	oesophagus
28	chr12:8981200-8983200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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