Variant report

Variant	rs7957179
Chromosome Location	chr12:8986079-8986080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8973639..8975831-chr12:8984866..8987670,2	K562	blood:
2	chr12:8980074..8981757-chr12:8983950..8986667,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166535	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10734734	0.90[EUR][1000 genomes]
rs10743504	0.90[EUR][1000 genomes]
rs11047510	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11047578	0.81[EUR][1000 genomes]
rs12296947	0.81[EUR][1000 genomes]
rs12823255	0.82[EUR][1000 genomes]
rs17729632	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17802399	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1894814	0.90[EUR][1000 genomes]
rs2377597	0.83[EUR][1000 genomes]
rs2377598	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4883182	0.84[EUR][1000 genomes]
rs4883183	0.81[EUR][1000 genomes]
rs4883184	0.84[EUR][1000 genomes]
rs4883185	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4883186	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4883187	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55906630	0.82[EUR][1000 genomes]
rs56230819	0.84[EUR][1000 genomes]
rs59908019	0.84[EUR][1000 genomes]
rs60175291	0.81[EUR][1000 genomes]
rs6487407	0.81[EUR][1000 genomes]
rs7136690	0.81[EUR][1000 genomes]
rs7300139	0.87[EUR][1000 genomes]
rs7301996	0.81[EUR][1000 genomes]
rs7302253	0.81[EUR][1000 genomes]
rs7304994	0.90[EUR][1000 genomes]
rs7305259	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7970580	0.94[EUR][1000 genomes]
rs7978604	0.81[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8979000-8995400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:8981600-8987200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:8981800-8986800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:8981800-8987400	Weak transcription	Esophagus	oesophagus
5	chr12:8982200-9022000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:8982600-8988000	Weak transcription	K562	blood
7	chr12:8983200-8986400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:8983400-9017600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:8983800-8999800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:8984000-8986600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:8984000-8987000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:8984400-8986600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:8985200-8987600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr12:8985400-8986600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr12:8985400-8992400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr12:8985600-8987000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr12:8985800-8986200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr12:8985800-8986200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:8985800-8986200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr12:8985800-8986200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr12:8985800-8986200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr12:8985800-8986800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr12:8985800-8988000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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