Variant report

Variant	rs7301996
Chromosome Location	chr12:9000507-9000508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10734734	0.84[EUR][1000 genomes]
rs10743504	0.84[EUR][1000 genomes]
rs11047510	0.84[EUR][1000 genomes]
rs11047578	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296947	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17729632	0.84[EUR][1000 genomes]
rs17802399	0.84[EUR][1000 genomes]
rs1860927	0.85[EUR][1000 genomes]
rs1894814	0.83[EUR][1000 genomes]
rs4883186	0.81[EUR][1000 genomes]
rs4883187	0.84[EUR][1000 genomes]
rs55906630	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56230819	0.96[EUR][1000 genomes]
rs57785077	0.83[AMR][1000 genomes]
rs59908019	0.96[EUR][1000 genomes]
rs60175291	0.97[EUR][1000 genomes]
rs6487407	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7136690	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7300139	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7302253	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7304994	0.84[EUR][1000 genomes]
rs7305259	0.85[EUR][1000 genomes]
rs7957179	0.81[EUR][1000 genomes]
rs7978604	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8982200-9022000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:8983400-9017600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:8987600-9004200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:8987600-9040000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:8987800-9002800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:8987800-9004800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr12:8987800-9012800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr12:8988200-9012800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:8994800-9016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:8996000-9007000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:8996000-9040000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:8996200-9001200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:8997000-9001600	Strong transcription	Esophagus	oesophagus
14	chr12:8997600-9004200	Weak transcription	Brain Anterior Caudate	brain
15	chr12:8998000-9001200	Weak transcription	Brain Substantia Nigra	brain
16	chr12:8998000-9002200	Weak transcription	Adipose Nuclei	Adipose
17	chr12:8998000-9002200	Weak transcription	K562	blood
18	chr12:8998800-9014600	Weak transcription	Right Atrium	heart
19	chr12:8999000-9016400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr12:9000400-9003400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links