Variant report

Variant	rs2379050
Chromosome Location	chr10:162271-162272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:158612..160347-chr10:160692..162271,2	MCF-7	breast:
2	chr10:159341..162454-chr10:178947..183047,3	K562	blood:
3	chr10:160045..163009-chr10:178854..180738,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000015171	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1017361	1.00[CEU][hapmap]
rs1367896	1.00[CEU][hapmap]
rs1476129	1.00[CEU][hapmap]
rs1545003	1.00[CEU][hapmap]
rs2043201	1.00[CEU][hapmap]
rs2303990	1.00[CEU][hapmap]
rs2436024	1.00[CEU][hapmap]
rs2436025	1.00[CEU][hapmap]
rs2436028	1.00[CEU][hapmap]
rs2436031	1.00[CEU][hapmap]
rs2448365	1.00[CEU][hapmap]
rs2448369	1.00[CEU][hapmap]
rs2448374	1.00[CEU][hapmap]
rs2448376	1.00[CEU][hapmap]
rs2448377	1.00[CEU][hapmap]
rs2448379	1.00[CEU][hapmap]
rs2448382	1.00[CEU][hapmap]
rs2496274	1.00[CEU][hapmap]
rs2496277	1.00[CEU][hapmap]
rs2496279	1.00[CEU][hapmap]
rs3123252	1.00[CEU][hapmap]
rs3132006	1.00[CEU][hapmap]
rs3740303	1.00[CEU][hapmap]
rs4390277	0.92[ASN][1000 genomes]
rs4469806	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4469807	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4504990	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4537685	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4600135	1.00[CEU][hapmap]
rs6560723	0.92[ASN][1000 genomes]
rs7081782	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7898275	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7905732	1.00[CEU][hapmap]
rs7910845	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7918734	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9329277	0.92[ASN][1000 genomes]
rs9329281	0.92[ASN][1000 genomes]
rs9419419	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9419433	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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