Variant report

Variant	rs7898275
Chromosome Location	chr10:185171-185172
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:176379..179219-chr10:182870..185240,2	K562	blood:
2	chr10:180632..182305-chr10:183823..186038,3	K562	blood:

Variant related genes	Relation type
ENSG00000015171	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1017361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1367896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1476129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs1545003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2007293	0.87[AMR][1000 genomes]
rs2043201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2303990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs2379050	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2436024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs2436025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2436028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2436031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2448365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2448367	0.81[AMR][1000 genomes]
rs2448369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs2448372	0.81[AMR][1000 genomes]
rs2448374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs2448375	0.83[AMR][1000 genomes]
rs2448376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2448377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2448379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2448382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs2496274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AMR][1000 genomes]
rs2496277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs2496279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs3001994	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs3123252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes]
rs3132006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes]
rs3740303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap]
rs4275539	0.81[AFR][1000 genomes]
rs4331015	0.81[AFR][1000 genomes]
rs4390277	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4469806	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4469807	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4504990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4537685	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4582897	0.82[AMR][1000 genomes]
rs4593933	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs4600135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AMR][1000 genomes]
rs4880517	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs58496617	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6560723	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6560742	0.82[AMR][1000 genomes]
rs7081782	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7089889	0.82[AFR][1000 genomes]
rs7478542	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7893922	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7905732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs7910845	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7914050	0.83[AMR][1000 genomes]
rs7918734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7919991	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs9329277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9329281	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9419419	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9419433	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9419435	0.81[AMR][1000 genomes]
rs9419436	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs9419475	1.00[JPT][hapmap]
rs9419499	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:183000-188800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr10:183000-191200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:183000-192600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:183000-196400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:183200-185600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr10:183200-185800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:183200-187200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:183200-188000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:183200-188400	Weak transcription	Fetal Kidney	kidney
10	chr10:183200-188600	Weak transcription	Fetal Intestine Large	intestine
11	chr10:183200-192200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:183200-205400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr10:183400-185200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr10:183400-185800	Weak transcription	Esophagus	oesophagus
15	chr10:183400-185800	Weak transcription	Right Ventricle	heart
16	chr10:183400-186000	Weak transcription	Fetal Heart	heart
17	chr10:183400-186000	Weak transcription	Fetal Lung	lung
18	chr10:183400-186400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:183400-186600	Weak transcription	Liver	Liver
20	chr10:183400-187200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:183400-188000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr10:183400-188000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:183400-188000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:183400-188000	Weak transcription	Lung	lung
25	chr10:183400-188000	Weak transcription	Ovary	ovary
26	chr10:183400-188000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:183400-188000	Weak transcription	Spleen	Spleen
28	chr10:183400-188200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:183400-188400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:183400-188600	Weak transcription	Brain Anterior Caudate	brain
31	chr10:183400-188600	Weak transcription	Brain Substantia Nigra	brain
32	chr10:183400-188600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:183400-188800	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:183400-194600	Weak transcription	Fetal Stomach	stomach
35	chr10:183400-194600	Weak transcription	Gastric	stomach
36	chr10:183400-199400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:183400-200800	Weak transcription	Thymus	Thymus
38	chr10:183600-185200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:183600-185400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:183600-187200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr10:183600-188000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:183600-188200	Weak transcription	NHEK	skin
43	chr10:183600-188400	Weak transcription	Colon Smooth Muscle	Colon
44	chr10:183600-199000	Weak transcription	HSMM	muscle
45	chr10:183800-187200	Weak transcription	Primary T cells from cord blood	blood
46	chr10:183800-187200	Weak transcription	Fetal Intestine Small	intestine
47	chr10:183800-187400	Weak transcription	GM12878-XiMat	blood
48	chr10:183800-188200	Weak transcription	A549	lung
49	chr10:183800-189000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr10:183800-191800	Weak transcription	Dnd41	blood

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