Variant report

Variant	rs58496617
Chromosome Location	chr10:169603-169604
allele	-/CGGAAGG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:168591..171249-chr10:178702..182532,3	MCF-7	breast:
2	chr10:167772..170758-chr10:173854..175773,2	MCF-7	breast:
3	chr10:137498..140184-chr10:169543..172889,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000015171	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1367896	0.82[AFR][1000 genomes]
rs2436024	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2448365	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2448369	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2496274	0.81[AMR][1000 genomes]
rs2496277	0.81[AMR][1000 genomes]
rs3001994	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4390277	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4469806	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4469807	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4504990	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4537685	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4593933	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4880517	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6560723	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7081782	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7478542	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7893922	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7898275	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7910845	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7918734	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7919991	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9329277	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9329281	0.90[AMR][1000 genomes]
rs9419419	0.90[AFR][1000 genomes]
rs9419433	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9419436	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9419499	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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