Variant report

Variant	rs2382389
Chromosome Location	chr9:13001873-13001874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1328908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1332067	1.00[AMR][1000 genomes]
rs1332073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1410775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1412302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16923068	1.00[AMR][1000 genomes]
rs16929699	1.00[AMR][1000 genomes]
rs16929728	1.00[AMR][1000 genomes]
rs16929797	1.00[AMR][1000 genomes]
rs1887883	1.00[AFR][1000 genomes]
rs6474746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7026118	0.84[AFR][1000 genomes]
rs7039550	0.82[AFR][1000 genomes]
rs7864857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv613616	chr9:12922330-13018096	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892576	chr9:12925921-13093345	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv917331	chr9:12941193-13146852	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv892579	chr9:12954161-13120380	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1033313	chr9:12985981-13037413	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13001000-13002400	Enhancers	Fetal Lung	lung
2	chr9:13001400-13003200	Enhancers	Fetal Heart	heart
3	chr9:13001600-13002000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:13001600-13002200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:13001600-13002400	Active TSS	Stomach Smooth Muscle	stomach
6	chr9:13001800-13002200	Active TSS	NHDF-Ad	bronchial
7	chr9:13001800-13002400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:13001800-13002400	Flanking Active TSS	Liver	Liver
9	chr9:13001800-13002400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr9:13001800-13002600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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