Variant report

Variant	rs16929797
Chromosome Location	chr9:12883148-12883149
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1328908	1.00[AMR][1000 genomes]
rs1332067	1.00[AMR][1000 genomes]
rs1332073	1.00[AMR][1000 genomes]
rs1410775	1.00[AMR][1000 genomes]
rs1412302	1.00[AMR][1000 genomes]
rs16923068	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929699	1.00[AMR][1000 genomes]
rs16929728	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2382389	1.00[AMR][1000 genomes]
rs35856256	1.00[AMR][1000 genomes]
rs4281192	1.00[AMR][1000 genomes]
rs6474746	1.00[AMR][1000 genomes]
rs7852730	1.00[EUR][1000 genomes]
rs7853482	1.00[EUR][1000 genomes]
rs7864857	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498136	chr9:12387840-12984158	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv892574	chr9:12754969-12918226	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv613615	chr9:12830070-12947238	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:12875200-12884800	Weak transcription	HMEC	breast
2	chr9:12879000-12884800	Weak transcription	Liver	Liver
3	chr9:12879000-12884800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:12880000-12883800	Enhancers	NHLF	lung
5	chr9:12880000-12884200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:12880200-12883800	Enhancers	NHDF-Ad	bronchial
7	chr9:12880400-12884000	Enhancers	Osteobl	bone
8	chr9:12881000-12884800	Weak transcription	Fetal Kidney	kidney
9	chr9:12881000-12899200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:12881200-12884800	Weak transcription	Fetal Intestine Small	intestine
11	chr9:12881200-12891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:12881600-12884600	Weak transcription	Stomach Mucosa	stomach
13	chr9:12882000-12884000	Enhancers	Hela-S3	cervix
14	chr9:12882200-12883600	Enhancers	Colon Smooth Muscle	Colon
15	chr9:12882200-12883800	Enhancers	HSMMtube	muscle
16	chr9:12882600-12883200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:12882600-12883800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:12882600-12884800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:12882600-12885400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:12882800-12883600	Enhancers	Rectal Smooth Muscle	rectum
21	chr9:12882800-12884800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:12882800-12884800	Weak transcription	Adipose Nuclei	Adipose
23	chr9:12882800-12884800	Weak transcription	Fetal Lung	lung
24	chr9:12882800-12884800	Weak transcription	NH-A	brain
25	chr9:12883000-12884600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:12883000-12884800	Weak transcription	A549	lung

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